IL_5NP6_134

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5NP6|1|Y|A|1801, 5NP6|1|Y|C|1816, 5NP6|1|Y|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_134 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1289

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5NP6|1|Y|U|1798
5NP6|1|Y|G|1799
5NP6|1|Y|C|1800
5NP6|1|Y|A|1801
5NP6|1|Y|A|1802
5NP6|1|Y|A|1803
5NP6|1|Y|C|1804
*
5NP6|1|Y|G|1813
5NP6|1|Y|G|1814
5NP6|1|Y|A|1815
5NP6|1|Y|C|1816
5NP6|1|Y|G|1817
5NP6|1|Y|U|1818
5NP6|1|Y|A|1819
5NP6|1|Y|U|1820
5NP6|1|Y|A|1821

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain D

Small subunit ribosomal RNA; SSU rRNA

Chain a

50S ribosomal protein L2