IL_5NP6_139

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_139 not in the Motif Atlas

Homologous match to IL_7A0S_071

Geometric discrepancy: 0.1099

The information below is about IL_7A0S_071

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_24886.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

12

Unit IDs

5NP6|1|Y|G|1933
5NP6|1|Y|C|1934
*
5NP6|1|Y|G|1964
5NP6|1|Y|C|1965
5NP6|1|Y|A|1966
5NP6|1|Y|C|1967

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain B

Transfer RNA; tRNA