IL_5NP6_164

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

5NP6|1|Y|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_164 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1686

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5NP6|1|Y|C|2636
5NP6|1|Y|U|2637
5NP6|1|Y|G|2638
5NP6|1|Y|A|2639
5NP6|1|Y|G|2640
*
5NP6|1|Y|C|2774
5NP6|1|Y|G|2775
5NP6|1|Y|A|2776
5NP6|1|Y|G|2777
5NP6|1|Y|A|2778
5NP6|1|Y|U|2779
5NP6|1|Y|G|2780
5NP6|1|Y|A|2781
5NP6|1|Y|G|2782

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain h

50S ribosomal protein L13