3D structure

PDB id
5NP6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S structure prior to bypassing
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GGAGUACGG*UUAAAAC
Length
16 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5NP6_182 not in the Motif Atlas
Homologous match to IL_6CZR_146
Geometric discrepancy: 0.1582
The information below is about IL_6CZR_146
Detailed Annotation
9x7 Sarcin-Ricin with inserted C; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_68633.1
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L
Number of instances in this motif group
1

Unit IDs

5NP6|1|D|G|887
5NP6|1|D|G|888
5NP6|1|D|A|889
5NP6|1|D|G|890
5NP6|1|D|U|891
5NP6|1|D|A|892
5NP6|1|D|C|893
5NP6|1|D|G|894
5NP6|1|D|G|895
*
5NP6|1|D|U|904
5NP6|1|D|U|905
5NP6|1|D|A|906
5NP6|1|D|A|907
5NP6|1|D|A|908
5NP6|1|D|A|909
5NP6|1|D|C|910

Current chains

Chain D
16S ribosomal RNA

Nearby chains

Chain O
30S ribosomal protein S12
Chain Y
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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