IL_5NP6_193

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_193 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1487

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5NP6|1|Y|U|1851
5NP6|1|Y|U|1852
5NP6|1|Y|A|1853
5NP6|1|Y|A|1854
5NP6|1|Y|U|1855
5NP6|1|Y|U|1856
5NP6|1|Y|G|1857
5NP6|1|Y|A|1858
5NP6|1|Y|U|1859
5NP6|1|Y|G|1860
*
5NP6|1|Y|U|1882
5NP6|1|Y|U|1883
5NP6|1|Y|G|1884
5NP6|1|Y|A|1885
5NP6|1|Y|U|1886
5NP6|1|Y|C|1887
5NP6|1|Y|G|1888
5NP6|1|Y|A|1889
5NP6|1|Y|A|1890
5NP6|1|Y|G|1891

Current chains

Chain Y

23S ribosomal RNA

Nearby chains