IL_5NRG_004

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GGGAG*CUUUGAUC

Length

13 nucleotides

Bulged bases

5NRG|1|X|U|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_004 not in the Motif Atlas

Homologous match to IL_4WF9_004

Geometric discrepancy: 0.0858

The information below is about IL_4WF9_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_54465.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

7

Unit IDs

5NRG|1|X|G|81
5NRG|1|X|G|82
5NRG|1|X|G|83
5NRG|1|X|A|84
5NRG|1|X|G|85
*
5NRG|1|X|C|97
5NRG|1|X|U|98
5NRG|1|X|U|99
5NRG|1|X|U|100
5NRG|1|X|G|101
5NRG|1|X|A|102
5NRG|1|X|U|103
5NRG|1|X|C|104

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L24

Chain V

50S ribosomal protein L29