IL_5NRG_006

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GAGAACUG*CUUAGUACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_006 not in the Motif Atlas

Geometric match to IL_4WF9_008

Geometric discrepancy: 0.0505

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_93502.1

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5NRG|1|X|G|190
5NRG|1|X|A|191
5NRG|1|X|G|192
5NRG|1|X|A|193
5NRG|1|X|A|194
5NRG|1|X|C|195
5NRG|1|X|U|196
5NRG|1|X|G|197
*
5NRG|1|X|C|204
5NRG|1|X|U|205
5NRG|1|X|U|206
5NRG|1|X|A|207
5NRG|1|X|G|208
5NRG|1|X|U|209
5NRG|1|X|A|210
5NRG|1|X|C|211
5NRG|1|X|C|212

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain I

50S ribosomal protein L15