IL_5NRG_024

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

AU*AUU

Length

5 nucleotides

Bulged bases

5NRG|1|X|U|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_024 not in the Motif Atlas

Homologous match to IL_4WF9_030

Geometric discrepancy: 0.2632

The information below is about IL_4WF9_030

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

5NRG|1|X|A|897
5NRG|1|X|U|898
*
5NRG|1|X|A|969
5NRG|1|X|U|970
5NRG|1|X|U|971

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L27

Chain W

50S ribosomal protein L30