IL_5NRG_038

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5NRG|1|X|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_038 not in the Motif Atlas

Homologous match to IL_4WF9_046

Geometric discrepancy: 0.0801

The information below is about IL_4WF9_046

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5NRG|1|X|C|1246
5NRG|1|X|G|1247
5NRG|1|X|U|1248
5NRG|1|X|U|1249
5NRG|1|X|G|1250
5NRG|1|X|A|1251
5NRG|1|X|A|1252
5NRG|1|X|G|1253
*
5NRG|1|X|U|1272
5NRG|1|X|G|1273
5NRG|1|X|G|1274
5NRG|1|X|A|1275
5NRG|1|X|G|1276

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L20