IL_5NRG_045

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

5NRG|1|X|U|1464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_045 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.2375

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5NRG|1|X|C|1461
5NRG|1|X|G|1462
5NRG|1|X|A|1463
5NRG|1|X|U|1464
5NRG|1|X|G|1465
*
5NRG|1|X|C|1624
5NRG|1|X|U|1625
5NRG|1|X|A|1626
5NRG|1|X|G|1627

Current chains

Chain X

23S ribosomal RNA

Nearby chains