IL_5NRG_063

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

5NRG|1|X|A|1965, 5NRG|1|X|U|1971, 5NRG|1|X|C|1990

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_063 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1384

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

5NRG|1|X|C|1961
5NRG|1|X|G|1962
5NRG|1|X|A|1963
5NRG|1|X|A|1964
5NRG|1|X|A|1965
5NRG|1|X|U|1966
5NRG|1|X|U|1967
5NRG|1|X|C|1968
5NRG|1|X|C|1969
5NRG|1|X|U|1970
5NRG|1|X|U|1971
5NRG|1|X|G|1972
*
5NRG|1|X|C|1988
5NRG|1|X|C|1989
5NRG|1|X|C|1990
5NRG|1|X|G|1991

Current chains

Chain X

23S ribosomal RNA

Nearby chains