IL_5NRG_087

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UGUAC*GGUAG

Length

10 nucleotides

Bulged bases

5NRG|1|X|U|2716, 5NRG|1|X|A|2717

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_087 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.065

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

5NRG|1|X|U|2714
5NRG|1|X|G|2715
5NRG|1|X|U|2716
5NRG|1|X|A|2717
5NRG|1|X|C|2718
*
5NRG|1|X|G|2745
5NRG|1|X|G|2746
5NRG|1|X|U|2747
5NRG|1|X|A|2748
5NRG|1|X|G|2749

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain K

50S ribosomal protein L17

Chain M

50S ribosomal protein L19