IL_5NRG_099

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UGC*GUAAA

Length

8 nucleotides

Bulged bases

5NRG|1|X|A|1926, 5NRG|1|X|A|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_099 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2373

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5NRG|1|X|U|1868
5NRG|1|X|G|1869
5NRG|1|X|C|1870
*
5NRG|1|X|G|1924
5NRG|1|X|U|1925
5NRG|1|X|A|1926
5NRG|1|X|A|1927
5NRG|1|X|A|1928

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2