IL_5NWY_025

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

5NWY|1|0|A|532, 5NWY|1|0|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NWY_025 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1416

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5NWY|1|0|G|515
5NWY|1|0|U|516
5NWY|1|0|G|517
5NWY|1|0|C|518
5NWY|1|0|C|519
5NWY|1|0|A|520
5NWY|1|0|G|521
*
5NWY|1|0|C|528
5NWY|1|0|G|529
5NWY|1|0|G|530
5NWY|1|0|U|531
5NWY|1|0|A|532
5NWY|1|0|A|533
5NWY|1|0|U|534
5NWY|1|0|A|535
5NWY|1|0|C|536

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 2

30S ribosomal protein S3

Chain 3

30S ribosomal protein S4

Chain B

30S ribosomal protein S12