IL_5NWY_034
3D structure
- PDB id
- 5NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAAUU*AGGAAU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NWY_034 not in the Motif Atlas
- Homologous match to IL_5J7L_034
- Geometric discrepancy: 0.0839
- The information below is about IL_5J7L_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
5NWY|1|0|A|673
5NWY|1|0|G|674
5NWY|1|0|A|675
5NWY|1|0|A|676
5NWY|1|0|U|677
5NWY|1|0|U|678
*
5NWY|1|0|A|712
5NWY|1|0|G|713
5NWY|1|0|G|714
5NWY|1|0|A|715
5NWY|1|0|A|716
5NWY|1|0|U|717
Current chains
- Chain 0
- 16S rRNA
Nearby chains
- Chain 5
- 30S ribosomal protein S6
- Chain A
- 30S ribosomal protein S11
- Chain H
- 30S ribosomal protein S18
- Chain K
- 30S ribosomal protein S21
- Chain P
- 50S ribosomal protein L2
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