IL_5NWY_035
3D structure
- PDB id
- 5NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGUAG*CGUAGAGA
- Length
- 13 nucleotides
- Bulged bases
- 5NWY|1|0|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NWY_035 not in the Motif Atlas
- Homologous match to IL_5J7L_035
- Geometric discrepancy: 0.0963
- The information below is about IL_5J7L_035
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_01488.3
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
5NWY|1|0|U|684
5NWY|1|0|G|685
5NWY|1|0|U|686
5NWY|1|0|A|687
5NWY|1|0|G|688
*
5NWY|1|0|C|699
5NWY|1|0|G|700
5NWY|1|0|U|701
5NWY|1|0|A|702
5NWY|1|0|G|703
5NWY|1|0|A|704
5NWY|1|0|G|705
5NWY|1|0|A|706
Current chains
- Chain 0
- 16S rRNA
Nearby chains
- Chain A
- 30S ribosomal protein S11
- Chain N
- Large subunit ribosomal RNA; LSU rRNA
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