IL_5O2R_142
3D structure
- PDB id
- 5O2R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGUAG*CGUAGAGA
- Length
- 13 nucleotides
- Bulged bases
- 5O2R|1|a|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5O2R_142 not in the Motif Atlas
- Homologous match to IL_5J7L_035
- Geometric discrepancy: 0.1068
- The information below is about IL_5J7L_035
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_01488.3
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
5O2R|1|a|U|684
5O2R|1|a|G|685
5O2R|1|a|U|686
5O2R|1|a|A|687
5O2R|1|a|G|688
*
5O2R|1|a|C|699
5O2R|1|a|G|700
5O2R|1|a|U|701
5O2R|1|a|A|702
5O2R|1|a|G|703
5O2R|1|a|A|704
5O2R|1|a|G|705
5O2R|1|a|A|706
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain k
- 30S ribosomal protein S11
Coloring options: