IL_5O5J_024
3D structure
- PDB id
- 5O5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5O5J|1|A|A|512, 5O5J|1|A|U|514, 5O5J|1|A|A|515
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5O5J_024 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2709
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5O5J|1|A|G|495
5O5J|1|A|U|496
5O5J|1|A|G|497
5O5J|1|A|C|498
5O5J|1|A|C|499
5O5J|1|A|A|500
5O5J|1|A|G|501
*
5O5J|1|A|C|508
5O5J|1|A|G|509
5O5J|1|A|G|510
5O5J|1|A|U|511
5O5J|1|A|A|512
5O5J|1|A|A|513
5O5J|1|A|U|514
5O5J|1|A|A|515
5O5J|1|A|C|516
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
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