IL_5O5J_034
3D structure
- PDB id
- 5O5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- UGUAG*CGCAGAUA
- Length
- 13 nucleotides
- Bulged bases
- 5O5J|1|A|A|682
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5O5J_034 not in the Motif Atlas
- Homologous match to IL_5J7L_035
- Geometric discrepancy: 0.3226
- The information below is about IL_5J7L_035
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_01488.3
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
5O5J|1|A|U|664
5O5J|1|A|G|665
5O5J|1|A|U|666
5O5J|1|A|A|667
5O5J|1|A|G|668
*
5O5J|1|A|C|679
5O5J|1|A|G|680
5O5J|1|A|C|681
5O5J|1|A|A|682
5O5J|1|A|G|683
5O5J|1|A|A|684
5O5J|1|A|U|685
5O5J|1|A|A|686
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain K
- 30S ribosomal protein S11
Coloring options: