IL_5O60_020

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

5O60|1|A|G|916, 5O60|1|A|G|920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O60_020 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1237

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5O60|1|A|G|789
5O60|1|A|A|790
5O60|1|A|A|791
5O60|1|A|G|792
5O60|1|A|C|793
*
5O60|1|A|G|914
5O60|1|A|U|915
5O60|1|A|G|916
5O60|1|A|A|917
5O60|1|A|U|918
5O60|1|A|A|919
5O60|1|A|G|920
5O60|1|A|C|921

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15