IL_5O60_023

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O60_023 not in the Motif Atlas

Homologous match to IL_7RQB_021

Geometric discrepancy: 0.0854

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

5O60|1|A|U|818
5O60|1|A|G|819
5O60|1|A|A|820
5O60|1|A|A|821
5O60|1|A|G|822
*
5O60|1|A|U|839
5O60|1|A|G|840
5O60|1|A|G|841
5O60|1|A|A|842
5O60|1|A|G|843

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2