IL_5O60_042

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

5O60|1|A|U|1151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O60_042 not in the Motif Atlas

Homologous match to IL_7A0S_038

Geometric discrepancy: 0.1385

The information below is about IL_7A0S_038

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

5O60|1|A|G|1149
5O60|1|A|A|1150
5O60|1|A|U|1151
5O60|1|A|G|1152
*
5O60|1|A|C|1239
5O60|1|A|G|1240
5O60|1|A|C|1241

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain N

50S ribosomal protein L16

Chain f

50S ribosomal protein L36