IL_5O60_064

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

5O60|1|A|U|1745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O60_064 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.107

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5O60|1|A|U|1689
5O60|1|A|A|1690
5O60|1|A|A|1691
5O60|1|A|G|1692
*
5O60|1|A|U|1742
5O60|1|A|G|1743
5O60|1|A|A|1744
5O60|1|A|U|1745
5O60|1|A|G|1746

Current chains

Chain A

23S rRNA

Nearby chains