IL_5O60_068

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

AUAG*CGAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O60_068 not in the Motif Atlas

Homologous match to IL_5J7L_303

Geometric discrepancy: 0.2385

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

5O60|1|A|A|1748
5O60|1|A|U|1749
5O60|1|A|A|1750
5O60|1|A|G|1751
*
5O60|1|A|C|1762
5O60|1|A|G|1763
5O60|1|A|A|1764
5O60|1|A|A|1765
5O60|1|A|U|1766

Current chains

Chain A

23S rRNA

Nearby chains