IL_5O60_074

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CAUGG*UGAG

Length

9 nucleotides

Bulged bases

5O60|1|A|U|1932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O60_074 not in the Motif Atlas

Geometric match to IL_5J7L_296

Geometric discrepancy: 0.2553

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5O60|1|A|C|1930
5O60|1|A|A|1931
5O60|1|A|U|1932
5O60|1|A|G|1933
5O60|1|A|G|1934
*
5O60|1|A|U|1960
5O60|1|A|G|1961
5O60|1|A|A|1962
5O60|1|A|G|1963

Current chains

Chain A

23S rRNA

Nearby chains