IL_5O60_082

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UUAAG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O60_082 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1872

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5O60|1|A|U|2068
5O60|1|A|U|2069
5O60|1|A|A|2070
5O60|1|A|A|2071
5O60|1|A|G|2072
*
5O60|1|A|U|2111
5O60|1|A|U|2112
5O60|1|A|A|2113
5O60|1|A|A|2114
5O60|1|A|G|2115

Current chains

Chain A

23S rRNA

Nearby chains