IL_5O60_094

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GGAGA*UCGUUGUUGAAAUAC

Length

20 nucleotides

Bulged bases

5O60|1|A|U|2395

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O60_094 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.1762

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5O60|1|A|G|2347
5O60|1|A|G|2348
5O60|1|A|A|2349
5O60|1|A|G|2350
5O60|1|A|A|2351
*
5O60|1|A|U|2383
5O60|1|A|C|2384
5O60|1|A|G|2385
5O60|1|A|U|2386
5O60|1|A|U|2387
5O60|1|A|G|2388
5O60|1|A|U|2389
5O60|1|A|U|2390
5O60|1|A|G|2391
5O60|1|A|A|2392
5O60|1|A|A|2393
5O60|1|A|A|2394
5O60|1|A|U|2395
5O60|1|A|A|2396
5O60|1|A|C|2397

Current chains

Chain A

23S rRNA

Nearby chains