IL_5O60_114

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UAUAC*GAUAG

Length

10 nucleotides

Bulged bases

5O60|1|A|U|2913, 5O60|1|A|A|2914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O60_114 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.233

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

5O60|1|A|U|2911
5O60|1|A|A|2912
5O60|1|A|U|2913
5O60|1|A|A|2914
5O60|1|A|C|2915
*
5O60|1|A|G|2942
5O60|1|A|A|2943
5O60|1|A|U|2944
5O60|1|A|A|2945
5O60|1|A|G|2946

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain O

50S ribosomal protein L17

Chain Q

50S ribosomal protein L19