IL_5O60_116
3D structure
- PDB id
- 5O60 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- GAUAAC*GGAAAC
- Length
- 12 nucleotides
- Bulged bases
- 5O60|1|A|A|2989
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5O60_116 not in the Motif Atlas
- Homologous match to IL_5J7L_350
- Geometric discrepancy: 0.0694
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5O60|1|A|G|2961
5O60|1|A|A|2962
5O60|1|A|U|2963
5O60|1|A|A|2964
5O60|1|A|A|2965
5O60|1|A|C|2966
*
5O60|1|A|G|2986
5O60|1|A|G|2987
5O60|1|A|A|2988
5O60|1|A|A|2989
5O60|1|A|A|2990
5O60|1|A|C|2991
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain G
- 50S ribosomal protein L6
- Chain K
- 50S ribosomal protein L13
- Chain f
- 50S ribosomal protein L36
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