IL_5O61_004

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GGGAG*CGUUGAUC

Length

13 nucleotides

Bulged bases

5O61|1|A|U|98

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_004 not in the Motif Atlas

Homologous match to IL_9DFE_004

Geometric discrepancy: 0.1437

The information below is about IL_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

5O61|1|A|G|78
5O61|1|A|G|79
5O61|1|A|G|80
5O61|1|A|A|81
5O61|1|A|G|82
*
5O61|1|A|C|95
5O61|1|A|G|96
5O61|1|A|U|97
5O61|1|A|U|98
5O61|1|A|G|99
5O61|1|A|A|100
5O61|1|A|U|101
5O61|1|A|C|102

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L24

Chain Z

50S ribosomal protein L29