IL_5O61_007

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_007 not in the Motif Atlas

Homologous match to IL_9DFE_007

Geometric discrepancy: 0.1191

The information below is about IL_9DFE_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5O61|1|A|U|239
5O61|1|A|G|240
5O61|1|A|A|241
5O61|1|A|G|242
5O61|1|A|U|243
5O61|1|A|A|244
5O61|1|A|G|245
*
5O61|1|A|C|253
5O61|1|A|G|254
5O61|1|A|A|255
5O61|1|A|A|256
5O61|1|A|A|257
5O61|1|A|G|258

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain e

50S ribosomal protein L35