IL_5O61_020

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

5O61|1|A|G|916, 5O61|1|A|G|920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_020 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1561

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5O61|1|A|G|789
5O61|1|A|A|790
5O61|1|A|A|791
5O61|1|A|G|792
5O61|1|A|C|793
*
5O61|1|A|G|914
5O61|1|A|U|915
5O61|1|A|G|916
5O61|1|A|A|917
5O61|1|A|U|918
5O61|1|A|A|919
5O61|1|A|G|920
5O61|1|A|C|921

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15