IL_5O61_027

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UGU*AGAG

Length

7 nucleotides

Bulged bases

5O61|1|A|G|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_027 not in the Motif Atlas

Geometric match to IL_9DFE_023

Geometric discrepancy: 0.3298

The information below is about IL_9DFE_023

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

5O61|1|A|U|959
5O61|1|A|G|960
5O61|1|A|U|961
*
5O61|1|A|A|1048
5O61|1|A|G|1049
5O61|1|A|A|1050
5O61|1|A|G|1051

Current chains

Chain A

23S rRNA

Nearby chains

Chain a

50S ribosomal protein L30