IL_5O61_048

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5O61|1|A|U|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_048 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1452

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5O61|1|A|C|1322
5O61|1|A|G|1323
5O61|1|A|G|1324
5O61|1|A|U|1325
5O61|1|A|G|1326
5O61|1|A|A|1327
5O61|1|A|A|1328
5O61|1|A|G|1329
*
5O61|1|A|U|1349
5O61|1|A|G|1350
5O61|1|A|G|1351
5O61|1|A|A|1352
5O61|1|A|G|1353

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L20