IL_5O61_058

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UCC*GCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_058 not in the Motif Atlas

Geometric match to IL_4V9F_047

Geometric discrepancy: 0.1756

The information below is about IL_4V9F_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

5O61|1|A|U|1560
5O61|1|A|C|1561
5O61|1|A|C|1562
*
5O61|1|A|G|1609
5O61|1|A|C|1610
5O61|1|A|A|1611

Current chains

Chain A

23S rRNA

Nearby chains

Chain BF

30S ribosomal protein S6