IL_5O61_062

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

5O61|1|A|U|1641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_062 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.2256

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5O61|1|A|C|1638
5O61|1|A|G|1639
5O61|1|A|A|1640
5O61|1|A|U|1641
5O61|1|A|G|1642
*
5O61|1|A|C|1797
5O61|1|A|U|1798
5O61|1|A|A|1799
5O61|1|A|G|1800

Current chains

Chain A

23S rRNA

Nearby chains