IL_5O61_063

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GGAA*UAUGC

Length

9 nucleotides

Bulged bases

5O61|1|A|U|1779

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_063 not in the Motif Atlas

Geometric match to IL_6DLR_005

Geometric discrepancy: 0.3349

The information below is about IL_6DLR_005

Detailed Annotation

tWW and near cWH

Broad Annotation

tWW and near cWH

Motif group

IL_04785.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5O61|1|A|G|1653
5O61|1|A|G|1654
5O61|1|A|A|1655
5O61|1|A|A|1656
*
5O61|1|A|U|1777
5O61|1|A|A|1778
5O61|1|A|U|1779
5O61|1|A|G|1780
5O61|1|A|C|1781

Current chains

Chain A

23S rRNA

Nearby chains