3D structure

PDB id
5O61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The complete structure of the Mycobacterium smegmatis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.31 Å

Loop

Sequence
CCGG*CG
Length
6 nucleotides
Bulged bases
5O61|1|A|C|2055
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5O61_080 not in the Motif Atlas
Homologous match to IL_5J7L_314
Geometric discrepancy: 0.1533
The information below is about IL_5J7L_314
Detailed Annotation
Minor groove platform, major groove intercalation
Broad Annotation
Minor groove platform, major groove intercalation
Motif group
IL_95583.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

5O61|1|A|C|2054
5O61|1|A|C|2055
5O61|1|A|G|2056
5O61|1|A|G|2057
*
5O61|1|A|C|2126
5O61|1|A|G|2127

Current chains

Chain A
23S rRNA

Nearby chains

Chain BA
Small subunit ribosomal RNA; SSU rRNA
Chain C
50S ribosomal protein L2

Coloring options:


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