3D structure

PDB id
5O61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The complete structure of the Mycobacterium smegmatis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.31 Å

Loop

Sequence
CUAGUAC*GGACCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5O61_113 not in the Motif Atlas
Homologous match to IL_7A0S_094
Geometric discrepancy: 0.1097
The information below is about IL_7A0S_094
Detailed Annotation
Sarcin-Ricin target in LSU H95; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.4
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

5O61|1|A|C|2876
5O61|1|A|U|2877
5O61|1|A|A|2878
5O61|1|A|G|2879
5O61|1|A|U|2880
5O61|1|A|A|2881
5O61|1|A|C|2882
*
5O61|1|A|G|2887
5O61|1|A|G|2888
5O61|1|A|A|2889
5O61|1|A|C|2890
5O61|1|A|C|2891
5O61|1|A|G|2892

Current chains

Chain A
23S rRNA

Nearby chains

Chain G
50S ribosomal protein L6
Chain L
50S ribosomal protein L14

Coloring options:


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