IL_5O61_115
3D structure
- PDB id
- 5O61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The complete structure of the Mycobacterium smegmatis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- UAUAC*GAUAG
- Length
- 10 nucleotides
- Bulged bases
- 5O61|1|A|U|2913, 5O61|1|A|A|2914
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5O61_115 not in the Motif Atlas
- Homologous match to IL_4WF9_102
- Geometric discrepancy: 0.2258
- The information below is about IL_4WF9_102
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_82016.1
- Basepair signature
- cWW-L-tHS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
5O61|1|A|U|2911
5O61|1|A|A|2912
5O61|1|A|U|2913
5O61|1|A|A|2914
5O61|1|A|C|2915
*
5O61|1|A|G|2942
5O61|1|A|A|2943
5O61|1|A|U|2944
5O61|1|A|A|2945
5O61|1|A|G|2946
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain O
- 50S ribosomal protein L17
- Chain Q
- 50S ribosomal protein L19
Coloring options: