IL_5O61_135

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UGAU*GG

Length

6 nucleotides

Bulged bases

5O61|1|BA|G|126, 5O61|1|BA|A|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_135 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.1431

The information below is about IL_4LFB_007

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

5O61|1|BA|U|125
5O61|1|BA|G|126
5O61|1|BA|A|127
5O61|1|BA|U|128
*
5O61|1|BA|G|231
5O61|1|BA|G|232

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BP

30S ribosomal protein S16

Chain BQ

30S ribosomal protein S17

Chain BT

30S ribosomal protein S20