IL_5O61_137

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GGAUAAG*UCUAAUAC

Length

15 nucleotides

Bulged bases

5O61|1|BA|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_137 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1318

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5O61|1|BA|G|144
5O61|1|BA|G|145
5O61|1|BA|A|146
5O61|1|BA|U|147
5O61|1|BA|A|148
5O61|1|BA|A|149
5O61|1|BA|G|150
*
5O61|1|BA|U|165
5O61|1|BA|C|166
5O61|1|BA|U|167
5O61|1|BA|A|168
5O61|1|BA|A|169
5O61|1|BA|U|170
5O61|1|BA|A|171
5O61|1|BA|C|172

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BT

30S ribosomal protein S20