IL_5O61_139

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

5O61|1|BA|U|244, 5O61|1|BA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_139 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.169

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

5O61|1|BA|U|242
5O61|1|BA|A|243
5O61|1|BA|U|244
5O61|1|BA|C|245
5O61|1|BA|A|246
5O61|1|BA|G|247
*
5O61|1|BA|C|277
5O61|1|BA|G|278
5O61|1|BA|A|279
5O61|1|BA|C|280
5O61|1|BA|G|281
5O61|1|BA|A|282
5O61|1|BA|C|283
5O61|1|BA|G|284

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BL

30S ribosomal protein S12

Chain BQ

30S ribosomal protein S17