IL_5O61_149

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_149 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.1876

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

5O61|1|BA|C|484
5O61|1|BA|G|485
5O61|1|BA|G|486
5O61|1|BA|C|487
5O61|1|BA|C|488
5O61|1|BA|A|489
5O61|1|BA|A|490
5O61|1|BA|C|491
*
5O61|1|BA|G|520
5O61|1|BA|G|521

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BD

30S ribosomal protein S4

Chain BL

30S ribosomal protein S12