IL_5O61_150

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

5O61|1|BA|A|512, 5O61|1|BA|U|514, 5O61|1|BA|A|515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_150 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.383

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5O61|1|BA|G|495
5O61|1|BA|U|496
5O61|1|BA|G|497
5O61|1|BA|C|498
5O61|1|BA|C|499
5O61|1|BA|A|500
5O61|1|BA|G|501
*
5O61|1|BA|C|508
5O61|1|BA|G|509
5O61|1|BA|G|510
5O61|1|BA|U|511
5O61|1|BA|A|512
5O61|1|BA|A|513
5O61|1|BA|U|514
5O61|1|BA|A|515
5O61|1|BA|C|516

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BC

30S ribosomal protein S3

Chain BD

30S ribosomal protein S4

Chain BL

30S ribosomal protein S12