IL_5O61_151

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

5O61|1|BA|A|552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_151 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1048

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

5O61|1|BA|C|549
5O61|1|BA|G|550
5O61|1|BA|U|551
5O61|1|BA|A|552
5O61|1|BA|A|553
5O61|1|BA|A|554
5O61|1|BA|G|555
*
5O61|1|BA|C|862
5O61|1|BA|G|863

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BB

Conserved domain protein

Chain BL

30S ribosomal protein S12

Chain BQ

30S ribosomal protein S17