IL_5O61_158

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CAGGG*UGGG

Length

9 nucleotides

Bulged bases

5O61|1|BA|G|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_158 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.086

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5O61|1|BA|C|642
5O61|1|BA|A|643
5O61|1|BA|G|644
5O61|1|BA|G|645
5O61|1|BA|G|646
*
5O61|1|BA|U|720
5O61|1|BA|G|721
5O61|1|BA|G|722
5O61|1|BA|G|723

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BF

30S ribosomal protein S6

Chain BO

30S ribosomal protein S15

Chain BR

30S ribosomal protein S18 2