IL_5O61_162

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_162 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0845

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

5O61|1|BA|C|759
5O61|1|BA|G|760
5O61|1|BA|A|761
5O61|1|BA|A|762
5O61|1|BA|C|763
*
5O61|1|BA|G|779
5O61|1|BA|G|780
5O61|1|BA|U|781
5O61|1|BA|A|782
5O61|1|BA|G|783

Current chains

Chain BA

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain BK

30S ribosomal protein S11

Chain C

50S ribosomal protein L2