IL_5O61_163

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_163 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0859

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

5O61|1|BA|G|869
5O61|1|BA|G|870
5O61|1|BA|A|871
5O61|1|BA|G|872
5O61|1|BA|U|873
5O61|1|BA|A|874
5O61|1|BA|C|875
5O61|1|BA|G|876
*
5O61|1|BA|U|887
5O61|1|BA|A|888
5O61|1|BA|A|889
5O61|1|BA|A|890
5O61|1|BA|A|891
5O61|1|BA|C|892

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BB

Conserved domain protein

Chain BL

30S ribosomal protein S12