IL_5O61_166

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

5O61|1|BA|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_166 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.1191

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5O61|1|BA|G|915
5O61|1|BA|C|916
5O61|1|BA|A|917
*
5O61|1|BA|U|1363
5O61|1|BA|U|1364
5O61|1|BA|C|1365
5O61|1|BA|C|1366
5O61|1|BA|C|1367

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BG

30S ribosomal protein S7

Chain BI

30S ribosomal protein S9

Chain BW

Transfer RNA; tRNA